Index

A

accuracy() (in module util)

AverageMeter (class in util)

C

CiteAutoencoder (class in model_rna) CiteAutoencoder_CITEseq (class in model) CiteAutoencoder_SHAREseq (class in model)

CiteAutoencoder_TEAseq (class in model) compute_log2() (in module util) compute_zscore() (in module util) CrossEntropyLabelSmooth (class in util)

D

Decoder (class in model) (class in model_rna)

Decoder_TEAseq (class in model)

E

Encoder (class in model) (class in model_rna)

Encoder_TEAseq (class in model)

F

forward() (model.CiteAutoencoder_CITEseq method) (model.CiteAutoencoder_SHAREseq method) (model.CiteAutoencoder_TEAseq method) (model.Decoder method) (model.Decoder_TEAseq method) (model.Encoder method) (model.Encoder_TEAseq method) (model_rna.CiteAutoencoder method) (model_rna.Decoder method) (model_rna.Encoder method) (util.CrossEntropyLabelSmooth method)

G

get_decodings() (in module util) get_encodings() (in module util)

get_simulated_data() (in module util) get_simulated_data_random_generation() (in module util) get_vae_simulated_data_from_sampling() (in module util)

K

KL_loss() (in module util)

L

LinBnDrop (class in model) (class in model_rna)

M

model module model_rna module module model model_rna predict train util

MyDataset (class in util)

P

predict module

R

read_fs_label() (in module util) read_h5_data() (in module util) real_label() (in module util)

reparameterize() (model.Encoder method) (model.Encoder_TEAseq method) (model_rna.Encoder method) reset() (util.AverageMeter method)

S

save_checkpoint() (in module util)

setup_seed() (in module util)

T

test_model() (in module predict) ToTensor (class in util) train module train_model() (in module train) training (model.CiteAutoencoder_CITEseq attribute) (model.CiteAutoencoder_SHAREseq attribute) (model.CiteAutoencoder_TEAseq attribute) (model.Decoder attribute) (model.Decoder_TEAseq attribute) (model.Encoder attribute) (model.Encoder_TEAseq attribute) (model.LinBnDrop attribute) (model_rna.CiteAutoencoder attribute) (model_rna.Decoder attribute) (model_rna.Encoder attribute) (model_rna.LinBnDrop attribute) (util.CrossEntropyLabelSmooth attribute)

U

update() (util.AverageMeter method)

util module